Getting the most from CSD-Discovery: An overview of features, case studies and applications
I’m a Research and Applications Scientist on the Discovery Science team at CCDC. In this short blog and accompanying video, I walk through how to make the most of your CSD-Enterprise licence using the tools in CSD-Discovery. The video highlights the available software in the Discovery suite and how it might fit into a drug development workflow. I also present real-world examples of a variety of research applications, including identifying dynamic disorder in semiconductors, advancing COVID-19 research and understanding ALR2 inhibitors for the treatment of diabetes complications.
A CSD-Discovery licence provides access to a range of software and database tools covering scientific applications within the drug discovery field, which includes:
-
GOLD, CCDC’s protein-ligand docking software.
-
CSD-CrossMiner, which enables data-mining of protein and small molecule crystal structures in both the Cambridge Structural Database (CSD) and the Protein Data Bank (PDB).
-
Ligand-based virtual screening workflow to find new hits.
-
CSD-Conformer Generator to generate molecular conformations.
-
CSD-Ligand Overlay for flexible alignment of ligands.
-
SuperStar, which is a knowledge-based pharmacophore prediction tool.
In addition, the suite includes everything available in CSD-Core, a Mercury menu for CSD-Discovery and access to the CSD Python API. The recent 2021.1 release introduced even more advanced settings when docking with GOLD programmatically through the API, which includes water handling, side-chain flexibility and pharmacophore constraints—plus additional GOLD docking configuration flags.
To learn more about how CSD-Discovery can support your research, click play! I’ll present some workflows that can you identify the best tool for your use case.
Read more
Learn more about how CSD-Discovery provides a single place for pharmaceutical and agrochemical researchers to access the tools they need to discover new molecules.
See more examples of how CSD-Discovery supports discovery science around the world.
Watch tips and tricks for getting the most from your CSD-Enterprise licence in this short video.
Tags
CSD Conformer Generator (6)
CSD Ligand Overlay (4)
CSD Python API (19)
CSD-Core (21)
CSD-CrossMiner (13)
CSD-Discovery (20)
CSD-Enterprise (8)
Drug Development (46)
Drug Discovery (62)
GOLD (19)
Pharmaceutical Discovery (37)
Pharmacophore (7)
SuperStar (6)