CSD Structures in Elsevier’s COVID-19 collection

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Written by

Ian Bruno

Posted on

March 25, 2020

Elsevier have made available a collection of around 20,000 articles relating to COVID-19. These are available to download for free for text and data mining.

A question one might ask is; which of these articles have an associated CSD structure?

I downloaded the metadata files for this collection and extracted article DOIs along with some additional metadata fields. I then used the CSD Python API to loop over all entries in the CSD and check whether any of these included an article DOI that identifies an article in the Elsevier COVID-19 collection. . The complete collection of CSD entries identified by this process can be viewed here. . This table lists the structures by paper, and provides a link to read the text and access the structure with Access Structures (open access). .
Journal Date Paper  Research Data  Authors Structure(s)
 Tetrahedron  2016  Use of chiral-pool approach into epi-thieno analogues of the scarce bioactive phenanthroquinolizidine alkaloids  Link   Peter Šafář et al   ELOJEW
 Bioorganic & Medicinal Chemistry Letters  2018 5′-Hydroxy-5′-homoaristeromycin: Synthesis and antiviral properties Link  Qi Chen et al  FEXNEE
 European Journal of Medicinal Chemistry  2009 Synthesis and anti-HIV studies of 2- and 3-adamantyl-substituted thiazolidin-4-ones  Link  Jan Balzarini et al  FOQYIU FOQYOA FOQYUG FOQZAN
 European Journal of Medicinal Chemistry  2010 Synthesis and in vitro cytostatic activity of new β-d-arabino furan[1′,2′:4,5]oxazolo- and arabino-pyrimidinone derivatives Link  Jean-Jacques Bosc et al  FUVVIC FUVVOI FUVVUO FUVWAV
 Tetrahedron  2012 An efficient microwave-assisted synthesis and biological properties of polysubstituted pyrimidinyl- and 1,3,5-triazinylphosphonic acids Link  Petr Jansa et al   GATDUC GATFAK
 Bioorganic & Medicinal Chemistry  2008 Hetero-Diels–Alder reaction of 1,3-bis(trimethylsilyloxy)-1,3-butadienes with arylsulfonylcyanides. Synthesis and antimicrobial activity of 4-hydroxy-2-(arylsulfonyl)pyridines Link  Ibrar Hussain et al  GOKFIW GOKFOC
 European Journal of Medicinal chemistry  2019 Chemical synthesis, crystal structure, versatile evaluation of their biological activities and molecular simulations of novel pyrithiobac derivatives Link  Ren-Jun Wu et al   HONMAB
 Tetrahedron Letters  2009 First synthesis of 4-(arylsulfonyl)phenols by regioselective [3+3] cyclocondensations of 1,3-bis(silyloxy)-1,3-butadienes with 2-arylsulfonyl-3-ethoxy-2-en-1-ones Link  Abdolmajid Riahi et al  HONWIR
 European Journal of Medicinal Chemistry  2015  Optimization of xanthatin extraction from Xanthium spinosum L. and its cytotoxic, anti-angiogenesis and antiviral properties Link  M. Romero et al  KOXFAG01
 Inorganica Chimica Acta  2010  Aromatic N-oxide bridged copper(II) coordination polymers: Synthesis, characterization and magnetic properties Link  Rupam Sarma et al MUSDEK MUSDIO MUSDOU MUSDUA
 Tetrahedron  2012   Facile cleavage of C–C bond: conversion of pyrane derivative to 1,3-oxazin derivative Link  Zhilan Lin et al  NEJJET NEJJIX
 Tetrahedron  2017 Efficient diastereoselective synthesis of a new class of azanucleosides: 2′-homoazanucleosides Link  Jakob Bouton et al  ZECWIQ
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COVID-19 (12)

WebCSD (19)