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CSD Structures in Elsevier’s COVID-19 collection

Written by

Ian Bruno

Posted on

March 25, 2020

Elsevier have made available a collection of around 20,000 articles relating to COVID-19. These are available to download for free for text and data mining.

A question one might ask is; which of these articles have an associated CSD structure?

I downloaded the metadata files for this collection and extracted article DOIs along with some additional metadata fields. I then used the CSD Python API to loop over all entries in the CSD and check whether any of these included an article DOI that identifies an article in the Elsevier COVID-19 collection.

The complete collection of CSD entries identified by this process can be viewed here.

This table lists the structures by paper, and provides a link to read the text and access the structure with Access Structures (open access).

Journal	Date	Paper	Research Data	Authors	Structure(s)
Tetrahedron	2016	Use of chiral-pool approach into epi-thieno analogues of the scarce bioactive phenanthroquinolizidine alkaloids	Link	Peter Šafář et al	ELOJEW
Bioorganic & Medicinal Chemistry Letters	2018	5′-Hydroxy-5′-homoaristeromycin: Synthesis and antiviral properties	Link	Qi Chen et al	FEXNEE
European Journal of Medicinal Chemistry	2009	Synthesis and anti-HIV studies of 2- and 3-adamantyl-substituted thiazolidin-4-ones	Link	Jan Balzarini et al	FOQYIU FOQYOA FOQYUG FOQZAN
European Journal of Medicinal Chemistry	2010	Synthesis and in vitro cytostatic activity of new β-d-arabino furan[1′,2′:4,5]oxazolo- and arabino-pyrimidinone derivatives	Link	Jean-Jacques Bosc et al	FUVVIC FUVVOI FUVVUO FUVWAV
Tetrahedron	2012	An efficient microwave-assisted synthesis and biological properties of polysubstituted pyrimidinyl- and 1,3,5-triazinylphosphonic acids	Link	Petr Jansa et al	GATDUC GATFAK
Bioorganic & Medicinal Chemistry	2008	Hetero-Diels–Alder reaction of 1,3-bis(trimethylsilyloxy)-1,3-butadienes with arylsulfonylcyanides. Synthesis and antimicrobial activity of 4-hydroxy-2-(arylsulfonyl)pyridines	Link	Ibrar Hussain et al	GOKFIW GOKFOC
European Journal of Medicinal chemistry	2019	Chemical synthesis, crystal structure, versatile evaluation of their biological activities and molecular simulations of novel pyrithiobac derivatives	Link	Ren-Jun Wu et al	HONMAB
Tetrahedron Letters	2009	First synthesis of 4-(arylsulfonyl)phenols by regioselective [3+3] cyclocondensations of 1,3-bis(silyloxy)-1,3-butadienes with 2-arylsulfonyl-3-ethoxy-2-en-1-ones	Link	Abdolmajid Riahi et al	HONWIR
European Journal of Medicinal Chemistry	2015	Optimization of xanthatin extraction from Xanthium spinosum L. and its cytotoxic, anti-angiogenesis and antiviral properties	Link	M. Romero et al	KOXFAG01
Inorganica Chimica Acta	2010	Aromatic N-oxide bridged copper(II) coordination polymers: Synthesis, characterization and magnetic properties	Link	Rupam Sarma et al	MUSDEK MUSDIO MUSDOU MUSDUA
Tetrahedron	2012	Facile cleavage of C–C bond: conversion of pyrane derivative to 1,3-oxazin derivative	Link	Zhilan Lin et al	NEJJET NEJJIX
Tetrahedron	2017	Efficient diastereoselective synthesis of a new class of azanucleosides: 2′-homoazanucleosides	Link	Jakob Bouton et al	ZECWIQ

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CSD Structures in Elsevier’s COVID-19 collection