Synchrotron Data in the CSD
Synchrotron diffraction data is included in the CSD and this FAQ details how to find and deposit synchrotron diffraction data. For more information about what data can be deposited into the CSD see our Deposit A Structure page.
As part of a CSD Improvement Project, we are working to ensure structures measured at synchrotron facilities are labelled consistently and can be searched for using CCDC tools. CSD entries identified as being measured at a synchrotron should be flagged with the phrase ‘synchrotron’. This information is added to the entry during Data Curation. Our curation software checks information in certain CIF fields to automatically identify synchrotron studies, but this information can also be added manually (if one of our Scientific Editors identifies a synchrotron structure during the curation process).
We are working to improve our tools to automatically identify and label more of these structures by recognising them from the information provided to us upon deposition of the structure to the CSD.
How to find synchrotron structures:
Synchrotron studies can be found using CCDC ConQuest. Select the ‘All Text’ button in the ‘Build Queries’ tab and then type ‘synchrotron’ in the box which appears. This should return a list of results where the keyword ‘synchrotron’ is associated with the entry.
There may be more information about the refinement process in the CCDC Notes section, found in the ‘Experimental’ Tab. This information is also displayed in our WebCSD system in the ‘Remark’ field.
Image of Refcode OFONUV showing how synchrotron diffraction structures are displayed in WebCSD
How to deposit:
To ensure your structure is identified correctly as being measured with synchrotron radiation we encourage you to identify this within your CIF file, by including ‘synchrotron’ in the _diffrn_radiation_type CIF field, e.g.:
|CIF field||Information to include|
|_diffrn_source||The general X-ray source used in experiment e.g. ‘synchrotron’|
|_diffrn_source_type||Specific information about the X-ray source used, such as the facility and beamline name|
|_diffrn_measurement_device||The general name of the goniometer used|
|_diffrn_measurement_device_type||Specific make/model of the goniometer used|
|_diffrn_detector||The general name of the detector used|
|_diffrn_detector_type||Specific make/model of the detector used.|
|_exptl_special_details||Any additional special details about the experimental setup|
|_diffrn_special_details||Any additional special details about the diffraction data collection|
The CCDC recommends including the name of the facility and beamline used for the experiment as we recognise the value of being able to trace data collected for facilities. More information on our work identifying the facility and beamline from synchrotron CIFs can be found on this poster and within this blog post about data completeness.
The full definition of what should be included in all of these fields can be found in the IUCr’s coreCIF dictionary.
The CCDC has a list of guidelines of the information we would recommend be present in a CIF, which can be found here.
We are currently working to evolve our underlying database and associated systems, and so we hope to be able to enhance our deposition processes and provide more options for you to recognise this type of structure and filter on these structures in the future.
This is an ongoing improvement project at CCDC. As such, until Version 5.42 of the database is released (estimated November 2020), a small proportion of the synchrotron studies in the CSD may be incorrectly labelled.