SuperStar - Predicting Protein-Ligand Interactions Using Experimental Data
SuperStar is a program for generating maps of interaction sites in proteins
or around small molecules using experimental information about
intermolecular interactions.
The interaction maps that SuperStar generates are therefore fully knowledge-based.
SuperStar retrieves its data from IsoStar, CCDC's interaction database. IsoStar
contains information about non-bonded interactions from both the Cambridge
Structural Database (CSD) and the Protein Data Bank (PDB).
SuperStar features:
- Fast generation of maps (less than 1 minute per binding site)
- Use of either CSD or PDB data
- Metal coordination data
- A choice of interfaces via Hermes or SYBYL
- Expert command-line interface
- Built-in cavity detection that selects residues automatically
- Knowledge-based approach: all results can be traced back to
experimentally observed geometries of interaction
- Application of parameterised Gaussian functions for speeding up calculations
- Choice of 14 CSD probes and 6 PDB probes selected for
diversity and data availability (including a water probe)
- Visualisation through 3D maps, Connolly surfaces, scatterplots, and
pharmacophore fitting points
- Extensive validation on a test set of 305 protein-ligand complexes
from the PDB and this is available for download.
Users of the Hermes interface to SuperStar may be interested to know that Hermes acts
as a hub for many of CCDC's products, for more information please refer to the
Hermes product page.
SuperStar is available as an option to all CSD System subscribers.
For a free evaluation of SuperStar, normally available for those interested in purchase, please contact CCDC.
|