CCDC




SuperStar - Predicting Protein-Ligand Interactions Using Experimental Data

SuperStar is a program for generating maps of interaction sites in proteins or around small molecules using experimental information about intermolecular interactions. The interaction maps that SuperStar generates are therefore fully knowledge-based.

SuperStar retrieves its data from IsoStar, CCDC's interaction database. IsoStar contains information about non-bonded interactions from both the Cambridge Structural Database (CSD) and the Protein Data Bank (PDB).

SuperStar features:

  • Fast generation of maps (less than 1 minute per binding site)
  • Use of either CSD or PDB data
  • Metal coordination data
  • A choice of interfaces via Hermes or SYBYL
  • Expert command-line interface
  • Built-in cavity detection that selects residues automatically
  • Knowledge-based approach: all results can be traced back to experimentally observed geometries of interaction
  • Application of parameterised Gaussian functions for speeding up calculations
  • Choice of 14 CSD probes and 6 PDB probes selected for diversity and data availability (including a water probe)
  • Visualisation through 3D maps, Connolly surfaces, scatterplots, and pharmacophore fitting points
  • Extensive validation on a test set of 305 protein-ligand complexes from the PDB and this is available for download.

Users of the Hermes interface to SuperStar may be interested to know that Hermes acts as a hub for many of CCDC's products, for more information please refer to the Hermes product page.

SuperStar PDB maps
SuperStar PDB maps
SuperStar CSD maps
SuperStar CSD maps

SuperStar is available as an option to all CSD System subscribers.
For a free evaluation of SuperStar, normally available for those interested in purchase, please contact CCDC.


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