This is an example list of PDB entries to use with the script.
Starting from a list of PDB-codes, the script generates idealized conformers
for ligands and evaluates their RMSD to the conformation in the PDB.
Usage: python find_binding_conformation.py pdb_example.txt
Output: subdirectories for each PDB entry with the conformers generated for each protein ligand, and a spreadsheet (.csv) with the results of the