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Mercury - Crystal Structure Visualisation, Exploration and Analysis Made Easy
Mercury offers a comprehensive range of tools for structure visualisation, the exploration of crystal packing and statistical
analysis of ConQuest geometric searches.
A base version of Mercury is available as a free download.
If you hold a current CSDS licence further features can be accessed by registering Mercury. Mercury features that are available only to CSDS licencees are identified by a small CCDC logo, for example
.
Basic Mercury features include:
- a full range of structure display styles, including displacement ellipsoids (N.B. displacement
ellipsoids will be displayed for CIFs or SHELX res files which contain Uequiv or Uij values only)
- the ability to measure and display distances, angles and torsion angles involving atoms, centroids and planes
- a number of output options for saving displays
- functionality for creating and displaying centroids, least-squares mean planes and Miller planes
- location and display of intermolecular and/or intramolecular hydrogen bonds,
short nonbonded contacts, and user-specified types of contacts
- the ability to build and visualise a network of intermolecular contacts
- the ability to calculate, display and save the powder diffraction
pattern for the structure on view
- the ability to display unit cell axes, the contents of any number of unit cells
in any direction, or a slice through a crystal in any direction
Licenced Mercury features include:
- options for displaying multiple structures simultaneously and performing
least-squares overlay of pairs of structures
- the ability to manually edit structures, or to automatically assign bond-types, standardise bond-types to
CSD conventions and to add missing hydrogen atoms
- the ability to calculate graph sets
- the ability to view structures in stereo assuming the correct hardware is available (not Mac OS X)
- an interface to MOPAC (2007 and newer) which allows users
to perform a limited number of molecule-based gas phase calculations
- Calculation of inter-molecular potentials using Gavezotti's UNI atom pair potentials
- Gasteiger charge calculation
- display of space-group symmetry elements
- calculation and display of voids (free space in crystal structures) based either on contact surface or solvent accessible surface
- links to libraries of of intra and inter-molecular geometry
(Mogul and IsoStar)
- statistical analysis tools that can be used to:
- analyse the results of ConQuest substructure searches where geometric parameters (e.g. bond lengths, angles, torsions etc) have been defined in the query.
- explore data interactively using a spreadsheet linked to Mercury's 3D view
- plot data e.g. as histograms and scatter plots
- calculate descriptive statistics, correlation matrices and hypothesis (significance) tests
- a CSD Solid Form module which features:
- a knowledge-based informatics toolset for improving effectiveness, quality and risk assessment in the development of solid formulations of drugs, agrochemicals and molecular materials.
A more comprehensive list of licenced features are provided in the
Mercury documentation. In addition, details
of new features available in the latest release of Mercury can be found in
Appendix D: What's New.
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