CCDC




Mercury - Crystal Structure Visualisation, Exploration and Analysis Made Easy

Mercury offers a comprehensive range of tools for structure visualisation, the exploration of crystal packing and statistical analysis of ConQuest geometric searches.

A base version of Mercury is available as a free download. If you hold a current CSDS licence further features can be accessed by registering Mercury. Mercury features that are available only to CSDS licencees are identified by a small CCDC logo, for example CCDC logo on licenced Mercury features.

Basic Mercury features include:

  • a full range of structure display styles, including displacement ellipsoids (N.B. displacement ellipsoids will be displayed for CIFs or SHELX res files which contain Uequiv or Uij values only)
  • the ability to measure and display distances, angles and torsion angles involving atoms, centroids and planes
  • a number of output options for saving displays
  • functionality for creating and displaying centroids, least-squares mean planes and Miller planes
  • location and display of intermolecular and/or intramolecular hydrogen bonds, short nonbonded contacts, and user-specified types of contacts
  • the ability to build and visualise a network of intermolecular contacts
  • the ability to calculate, display and save the powder diffraction pattern for the structure on view
  • the ability to display unit cell axes, the contents of any number of unit cells in any direction, or a slice through a crystal in any direction

Licenced Mercury features include:

  • options for displaying multiple structures simultaneously and performing least-squares overlay of pairs of structures
  • the ability to manually edit structures, or to automatically assign bond-types, standardise bond-types to CSD conventions and to add missing hydrogen atoms
  • the ability to calculate graph sets
  • the ability to view structures in stereo assuming the correct hardware is available (not Mac OS X)
  • an interface to MOPAC (2007 and newer) which allows users to perform a limited number of molecule-based gas phase calculations
  • Calculation of inter-molecular potentials using Gavezotti's UNI atom pair potentials
  • Gasteiger charge calculation
  • display of space-group symmetry elements
  • calculation and display of voids (free space in crystal structures) based either on contact surface or solvent accessible surface
  • links to libraries of of intra and inter-molecular geometry (Mogul and IsoStar)
  • statistical analysis tools that can be used to:
    • analyse the results of ConQuest substructure searches where geometric parameters (e.g. bond lengths, angles, torsions etc) have been defined in the query.
    • explore data interactively using a spreadsheet linked to Mercury's 3D view
    • plot data e.g. as histograms and scatter plots
    • calculate descriptive statistics, correlation matrices and hypothesis (significance) tests
  • a CSD Solid Form module which features:
    • a knowledge-based informatics toolset for improving effectiveness, quality and risk assessment in the development of solid formulations of drugs, agrochemicals and molecular materials.

A more comprehensive list of licenced features are provided in the Mercury documentation. In addition, details of new features available in the latest release of Mercury can be found in Appendix D: What's New.

Two asymmetric units of CSD entry NAMLAO
The sheet structure of triaminoguanidinium chloride
The ladder motif in sulphathiazole form II

A (-1 1 0) slice through the lattice of sulphathiazole form IV
Display of Bravais, Friedel, Donnay and Harker (BFDH) theoretical crystal morphologies
Displacement ellipsoid display




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