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GoldMine - Post-processing of docking results
GoldMine is a tool for post-processing of GOLD docking results.
GoldMine can be
used to combine and analyse several docking runs, e.g. docking runs carried out
against different protein models may be combined within a GoldMine database and
analysed for selectivity and specificity. Docking runs carried out using one
protein model but scored using different scoring functions may also be combined
and evaluated within a GoldMine database. GoldMine is provided as part of the
GOLD Suite, a package of programs for structure visualisation and manipulation
(Hermes),
for protein-ligand docking (GOLD) and for
post-processing (GoldMine) and visualisation of docking results. Hermes acts as
a hub for many of CCDC's products, for more information please refer to the
Hermes product page.
Use GoldMine to:
- View and sort textual/numerical descriptor data for individual poses
- Generate histograms and scatterplots for numeric descriptors
- Filter your results in a sophisticated manner e.g. by setting ranges for
descriptors and combining them using Boolean logic
- Analyse docking poses for multiple ligands/proteins
- Arithmetically manipulate fitness score components and descriptor values, enabling
consensus scoring
- Calculate descriptive statistics for descriptors and correlation matrices between descriptors
- Establish best target specific analysis protocols for virtual screening
- Construct 3D Quantitative Structure Activity Relationships (QSAR)
- Calculate Euclidian distances
- Calculate hotspots for a selection of docking solutions, allowing trends in
the docking solutions to be observed and used in the calculation of descriptors
A certain number of GoldMine user licences are usually provided as part of the
GOLD software package. Extra licences may be purchased in addition. For a free
evaluation of the GOLD Suite, normally available for those interested in purchase,
please contact CCDC.
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