Each entry in the CSD contains a number of data items. These are obtained from
the CIF, the published paper or derived by CCDC. Every data item is validated
by CCDC Scientific Editors and/or CCDC software. The following table is a
non-exhaustive list of what an entry may contain (this depends on what
information is available in the CIF or the published paper). It details where
we locate the data and where it can be found in the entry as viewed in the
multi-pane version of ConQuest.
Other information is stored with CSD entries; details are provided elsewhere (see
General Information Content).
Data Item |
Source of information |
Location in CSD entry |
Additional comments |
Author names |
Published paper |
Author/Journal tab |
Some standardisation of names is applied to comply with CCDC rules. |
Compound name/synonym |
Published paper/CCDC |
Chemical tab |
Compound names generally try to
reflect what is given by the author in the paper. A compound may have several
synonyms. Both the compound name and synonym are searched when a name query is
undertaken. Names given by the CCDC give reference to the IUPAC rules on the
nomenclature of organic chemistry and may also utilise the ACD naming package.
Polymeric compounds are always denoted with the term catena-. |
Formula |
CIF/CCDC |
Chemical tab |
A moiety formula with stoichiometries
(and charges) is given. Discrepancies can occur with disordered compounds or in
cases with partially charged molecules. |
Journal Citation |
Published paper |
Author/Journal tab |
The reference is usually given in
standard Journal, Volume, (first ) Page, Year format. For private communications
or structures from theses, details of the workplace of the contributor are
given in this section. |
DOI |
Published paper/CCDC |
Author/Journal tab and CSD Internals |
Most papers now have a DOI reference
which is hyperlinked to the publisher's website for the article. |
Cell parameters |
CIF/Published paper |
Crystal tab |
Any discrepancies between the unit
cell dimensions given in the paper and deposited CIF are noted under the
Experimental tab, CCDC notes. Occasionally, additional cell parameters will be
given in the crystal tab, additional information, notes. This occurs e.g. in
cases where cell dimensions are reported at a range of temperatures without a
full data collection. |
Space Group |
CIF/Published paper |
Crystal tab |
Any discrepancies between the space
group given in the paper and in the deposited CIF are noted in the Experimental
tab, CCDC notes. |
Z value |
CIF/Published paper/CCDC |
Crystal tab |
The Z value is usually taken from
the deposited CIF. In some cases (for example if a different polymeric unit is
chosen) a multiple may be used. |
Class |
CCDC |
Chemical tab, CCDC class |
The CCDC currently include 8
sub-categories of materials to enable more efficient searching of some
structure types. These are: Carbohydrates and their metal complexes
(including Inositols); Nucleosides, nucleotides and their metal complexes;
Amino-acids, peptides and their metal complexes ; Porphyrins, corrins and
their metal complexes; Steroids; Terpenes; Alkaloids and Organic polymers.
An entry can have 2 class assignments. |
Radiation |
CIF/Published paper |
Experimental tab, extra information |
Experiments using synchrotron and
neutron radiation are noted. Radiation wavelengths are not given. |
Powder |
CIF/Published paper |
Experimental tab, extra information |
Data is generally assumed to have
been determined from single-crystal studies. Structures determined from powder
data are specifically noted. |
Pressure |
CIF/Published paper |
Experimental tab, extra information |
Experiments can be assumed to have
taken place under atmospheric conditions unless a pressure is quoted. |
R-factor |
CIF/Published paper |
Experimental tab |
For single crystal studies the R
factor shown is automatically chosen from the CIF by picking the lowest value
from _refine_ls_wR_factor_all, _refine_ls_wR_factor_obs, _refine_ls_wR_factor_gt
and _refine_ls_wR_factor_ref. |
Density |
CIF/CCDC |
Experimental tab |
Two density values are normally
quoted; the value _exptl_crystal_density_diffrn taken from the CIF and a value
calculated by CCDC software. Discrepancies may arise in disordered structures
where not all atoms have been modelled. If the value from the CIF is inaccurate
(e.g. if SQUEEZE/PLATON has been used) the value is not included in the entry. |
Temperature |
CIF/Published paper |
Experimental tab and CSD Internals |
Taken from the _diffrn_ambient_temperature
line of the CIF. If this is not present the value from _cell_measurement_temperature
is chosen. If values given in the CIF and paper differ by more than 10 K the
other value is noted under the Experimental tab, CCDC notes. If no temperature
is given, room temperature is assumed. |
Melting Point |
CIF/Published paper |
Chemical tab and CSD Internals |
The melting point is NOT taken from DSC/TGA analysis. |
Colour |
CIF/Published paper |
Chemical tab and CSD Internals |
American spelling is used for
colorless. Certain descriptors are removed, such as clear and transparent. |
Habit |
CIF/Published paper |
Crystal tab and CSD Internals |
Author's terminology is used.
Certain descriptors are removed including chip and fragment. |
Crystallisation solvent |
CIF/Published paper |
Crystal tab, additional information
and CSD Internals |
The solvent(s) used specifically to
prepare the crystal for X-ray analysis are given. |
Polymorph |
Published paper |
Crystal tab and CSD Internals |
Polymorphs are generally recorded
using the author's terminology. Pseudopolymorphs (i.e structures with different
solvent or levels of hydration) are not included. Polymorphs are categorised
in the same refcode family.
|
Sensitivity |
Published paper |
Chemical tab, extra information and CSD Internals |
Recorded if the paper makes explicit
reference to sensitivity of the compound studied. General phrases such as
'All experiments were performed under an atmosphere of nitrogen' are not included. |
Isostructural materials |
Published paper |
Crystal tab, notes and CSD Internals |
A description of materials described
by the authors as isostructural, isomorphous or isotypic analogues. Details of
isoelectronic, analogous or isomeric structures are not given. |
Phase-transition |
Published paper |
Crystal tab, notes and CSD Internals |
This includes brief details of the
temperatures, pressure or other conditions of phase transitions. Also included
are details of spin-crossover transitions. |
Twinning |
CIF/Published paper |
Experimental tab, extra information and CSD Internals |
Twinning derived from diffraction of
the crystal (i.e not from visual inspection of the bulk solid) is noted. In some
cases additional information on the type of twinning (inversion, racemic etc) is given. Twin laws and batch scale factor (BASF) values are not included. |
Disorder |
CIF/Published paper/CCDC |
- |
In general, the major occupancy
sites of disordered atoms are shown, with the minor occupancy ones being
suppressed. The coordinates of the minor occupancy atoms are retained, but
connectivity is only shown for the major site. In the case of mixed occupancy
sites (eg mixed metal or mixed halogen) the major component is chosen and the
compound named accordingly. The disorder comment will include the sum formula
in these cases. Compounds with mixed occupancy sites are given a separate
refcode to the full occupancy equivalent. Solvent molecules with symmetry
related disorder leading to short bonds are usually suppressed. However, in
the case of symmetry related disorder of the main molecules or clathrated
solvents the connectivity is retained. |
Disorder comments |
CCDC |
Experimental tab, disorder |
A brief comment on the treatment of
disorder in the structure is given. This includes cases when unmodelled disorder
is mentioned. The occupancies of major and minor sites are normally given and
cases of symmetry related disorder are explicitly noted. |
SQUEEZE |
CIF/Published paper |
Experimental tab, disorder |
Molecules modelled using the
SQUEEZE/PLATON program are (if possible) included in the name, 2D representation
and formula of the compound. In some cases insufficient data is available,
and the term 'unknown solvate' is added to the name of the compound with
additional information given under Experimental tab, disorder. If included in
the deposited CIF, or paper, the comment may include the number of electrons
removed and the void size. |
Natural source |
Published paper |
Chemical tab, source and CSD Internals |
The original source of a natural product. |
Absolute configuration |
CIF/Published paper |
Chemical tab, extra information |
Absolute configuration is only given
if determined from the X-ray data, i.e. NOT from the synthesis or non-crystallographic
methods such as circular dichroism. Absolute configuration is included if
specifically mentioned in the paper or if the CIF term _chemical_absolute_configuration
is given as either ad or rmad. It is also required that the Flack parameter given
has a reasonable value and is quoted with an e.s.d. |
Relationships between entries |
Published paper/CCDC |
Chemical tab, extra information and CSD Internals |
Descriptions of the stereochemistry
of the material are included in the name whenever possible. Stereoisomers
(and racemates) are given separate refcodes, however the entries are
cross-referenced for ease of comparison. |
Structural Descriptors |
Published paper |
Chemical tab, extra information and CSD Internals |
Information on the conformation or
any other structural descriptors of the molecule may be given in this section,
especially for macromolecules such as calixarenes. |
Bioactivity |
Published paper |
Chemical tab, extra information and CSD Internals |
A brief indication of any possible
biological interest is given, including cases where compounds have been tested
and shown to be inactive or where there is biological activity of near relatives.
The intention is that users will consult the published paper for full details.
English as opposed to American spelling is used. |
Peptide Sequence |
CCDC |
Chemical tab, synonym |
Molecules containing more than one
alpha-amino acid in an independent residue (including peptides, pseudo-peptides
and retro-peptides) are given a peptide sequence code. This details the linkages
of the individual amino acid groups and enables additional search functionality.
This is not given in cases when the amino acid is complexed to a main group
element or a transition metal atom. |
Other experimental properties |
Published paper |
Chemical tab, extra information and CSD internals |
Certain other properties of the
material, reported in the paper, are noted. The most common of these are
luminescence (photoluminescence and fluorescence are also used) and magnetic
properties. |
Remarks |
CCDC |
Experimental tab, CCDC notes and CSD Internals |
Discrepancies between values quoted
in the paper and CIF, or problems noted with the structure during the abstracting
process are recorded as additional remarks in this section. |