CCDC




Relibase - Easy Searching of Protein-Ligand Complexes

Relibase is a web-based database that provides tools for the investigation and analysis of protein-ligand complexes. Relibase provides easy access to all such experimental structures within the Protein Data Bank (PDB).

Relibase features:

  • An intuitive web-based user interface
  • A fast database search engine
  • Standard text searching
  • 2D substructure searching
  • 3D protein-ligand interaction searching
  • Ligand similarity searching
  • Clear 3D visualisation using AstexViewer
  • Automatic superposition of related binding sites to compare ligand binding modes, water positions, ligand-induced conformational changes, etc.
  • Secondary structure classification and searching according to a novel and comprehensive turn and helix assignment scheme

The web accessible version of Relibase is freely available to academic users at the following web addresses;

http://relibase.ccdc.cam.ac.uk
http://relibase.rutgers.edu

Relibase+ is the commercial version of Relibase and has a number of additional features including the ability to generate proprietary databases that are searchable alongside the PDB.

The Relibase(+) client runs on popular web browsers on Windows and UNIX (including Linux) operating systems

Superposition of the binding sites of...
Result of a search for nonbonded interactions




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